MLOps Basics [Week 4]: Model Packaging - ONNX – Raviraja’s Blog

Excerpt

Models can be built using any machine learning framework available out there (sklearn, tensorflow, pytorch, etc.). We might want to run in a different framework (trained in pytorch, inference in tensorflow). A common file format will help a lot. In this post, let’s see how to do this using ONNX.

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📦 Model Packaging

Why do we need model packaging? Models can be built using any machine learning framework available out there (sklearn, tensorflow, pytorch, etc.). We might want to deploy models in different environments like (mobile, web, raspberry pi) or want to run in a different framework (trained in pytorch, inference in tensorflow). A common file format to enable AI developers to use models with a variety of frameworks, tools, runtimes, and compilers will help a lot.

This is achieved by a community project ONNX.

In this post, I will be going through:

• What is ONNX?

• How to convert a trained model to ONNX format?

• What is ONNX Runtime?

• How to run ONNX converted model in ONNX Runtime?

• Comparisons

What is ONNX?

ONNX is an open format built to represent machine learning models.

ONNX defines a common set of operators - the building blocks of machine learning and deep learning models - and a common file format to enable AI developers to use models with a variety of frameworks, tools, runtimes, and compilers.

The ONNX format is the basis of an open ecosystem that makes AI more accessible and valuable to all:

• developers can choose the right framework for their task
• framework authors can focus on innovative enhancements
• hardware vendors can streamline optimizations for neural network computations.

Thus, ONNX is an open file format to store (trained) machine learning models/pipelines containing sufficient detail (regarding data types etc.) to move from one platform to another.

Models in ONNX format can be easily deployed to various cloud platforms as well as to IoT devices.

⏳ How to convert a trained model to ONNX format?

Since we are using Pytorch Lightning ⚡️ which is a wrapper around Vanilla Pytorch 🍦, there are two ways to convert the model into

format.

• Using onnx.export method in 🍦

• Using to_onnx method in ⚡️

Exporting using model using 🍦 Pytorch

In order to convert the model into ONNX format, we need to specify some things:

Trained model which needs to be converted

model_path = f"{root_dir}/models/best-checkpoint.ckpt" cola_model = ColaModel.load_from_checkpoint(model_path)

Sample input format (which the forward method takes with batch_size as 1)

input_batch = next(iter(data_model.train_dataloader())) input_sample = { "input_ids": input_batch["input_ids"][0].unsqueeze(0), "attention_mask": input_batch["attention_mask"][0].unsqueeze(0), }

• Input names, Output names
• Dynamic axes (batch size dimension)

Complete code looks like:

torch.onnx.export( cola_model, # model being run ( input_sample["input_ids"], input_sample["attention_mask"], ), # model input (or a tuple for multiple inputs) f"{root_dir}/models/model.onnx", # where to save the model export_params=True, opset_version=10, input_names=["input_ids", "attention_mask"], # the model's input names output_names=["output"], # the model's output names dynamic_axes={ # variable length axes "input_ids": {0: "batch_size"}, "attention_mask": {0: "batch_size"}, "output": {0: "batch_size"}, }, )

Exporting using model using ⚡️ Pytorch Lightning

Converting model to onnx with multi-input is not added yet. See the issue here

Let’s see when the input is a single tensor.

⚡️ Module class comes with an in-built method to_onnx. Call that method with the necessary parameters:

• Name of the onnx model
• Input sample
• Input names
• Output names
• Dynamic axes

The code looks like:

model.to_onnx( "model.onnx", # where to save the model input_sample, # input samples with atleast batch size as 1 export_params=True, opset_version=10, input_names = ['input'], # Input names output_names = ['output'], # Output names dynamic_axes={ # variable length axes 'input' : {0 : 'batch_size'}, 'output' : {0 : 'batch_size'}, }, )

Now that the model is converted into

format, Let’s load it to run the inference.

👟 What is ONNX Runtime?

ONNX Runtime is a performance-focused inference engine for ONNX models.

ONNX Runtime was designed with a focus on performance and scalability in order to support heavy workloads in high-scale production scenarios. It also has extensibility options for compatibility with emerging hardware developments.

⚙️ Installation

Install onnxruntime using the following command:

pip install onnxruntime

ONNX Runtime is supported on different Operating System (OS) and hardware (HW) platforms. The Execution Provider (EP) interface in ONNX Runtime enables easy integration with different HW accelerators.

Check all the providers of ONNXRuntime using the command

from onnxruntime import get_all_providers print(get_all_providers())

Sample output looks like:

[ 'TensorrtExecutionProvider', 'CUDAExecutionProvider', 'MIGraphXExecutionProvider', 'ROCMExecutionProvider', 'OpenVINOExecutionProvider', 'DnnlExecutionProvider', 'NupharExecutionProvider', 'VitisAIExecutionProvider', 'NnapiExecutionProvider', 'ArmNNExecutionProvider', 'ACLExecutionProvider', 'DmlExecutionProvider', 'RknpuExecutionProvider', 'CPUExecutionProvider' ]

🏃♂️ How to run ONNX converted model in ONNX Runtime?

In order to load the

model, certain things needs to be done:

Create Inference Session which will load the onnx model

import onnxruntime as ort ort_session = ort.InferenceSession(onnx_model_path)

Prepare the inputs for the session

The input names should match the names used while creating the onnx model.

ort_inputs = { "input_ids": np.expand_dims(processed["input_ids"], axis=0), "attention_mask": np.expand_dims(processed["attention_mask"], axis=0), }

Run the session

Run the inference session with the inputs

ort_output = ort_session.run(None, ort_inputs)

None will return all the outputs. If the model return multiple outputs, specifying the output name here will return only that output

Complete code looks like:

class ColaPredictor: def __init__(self, model_path): # creating the onnxruntime session self.ort_session = ort.InferenceSession(model_path) self.processor = DataModule() self.lables = ["unacceptable", "acceptable"] def predict(self, text): inference_sample = {"sentence": text} processed = self.processor.tokenize_data(inference_sample) # Preparing inputs ort_inputs = { "input_ids": np.expand_dims(processed["input_ids"], axis=0), "attention_mask": np.expand_dims(processed["attention_mask"], axis=0), } # Run the model (None = get all the outputs) ort_outs = self.ort_session.run(None, ort_inputs) # Normalising the outputs scores = softmax(ort_outs[0])[0] predictions = [] for score, label in zip(scores, self.lables): predictions.append({"label": label, "score": score}) return predictions

This is the python api example for onnxruntime. For other language support refer to the documentation here

⏲ Comparisons

Let’s compare the response time for both methods (standard pytorch inference, onnxruntime inference)

Experiment: Running a sample of 10 sentences after a initial warmp-up(loading the model and running inference on 1 sentence)

Inference times of Pytorch Model

function:'predict' took: 0.00427 sec function:'predict' took: 0.00420 sec function:'predict' took: 0.00437 sec function:'predict' took: 0.00587 sec function:'predict' took: 0.00531 sec function:'predict' took: 0.00504 sec function:'predict' took: 0.00658 sec function:'predict' took: 0.00491 sec function:'predict' took: 0.00520 sec function:'predict' took: 0.00476 sec

Inference times of ONNX format model

function:'predict' took: 0.00144 sec function:'predict' took: 0.00128 sec function:'predict' took: 0.00132 sec function:'predict' took: 0.00136 sec function:'predict' took: 0.00134 sec function:'predict' took: 0.00132 sec function:'predict' took: 0.00144 sec function:'predict' took: 0.00132 sec function:'predict' took: 0.00172 sec function:'predict' took: 0.00187 sec

As it is visible from the logs there is an improvment of 2-3x using ONNX + ONNXRuntime formant for inference compared to standard pytorch inference.

🔚

This concludes the post. These are only a few capabilities of

format.

I have used pytorch only. ONNX supports various frameworks. Look into the documentation here for more information

Complete code for this post can also be found here: Github

References

• Abhishek Thakur tutorial on onnx model conversion
• Pytorch Lightning documentation on onnx conversion
• Huggingface Blog on ONNXRuntime
• Piotr Blog on onnx conversion